Lines Matching refs:SAM
28 >>0x08 lelong =1 \b, using SAM format
45 >>&0x00 regex =^[@]HD\t.*VN: \b, with SAM header
144 # SAM (Sequence Alignment/Map format)
147 # Short-cut version to recognise SAM files with (optional) header at beginning
150 >4 search VN: Sequence Alignment/Map (SAM), with header
153 # Longer version to recognise SAM alignment lines using (many) regexes
155 # SAM Alignment QNAME
157 # SAM Alignment FLAG
159 # SAM Alignment RNAME
161 # SAM Alignment POS
163 # SAM Alignment MAPQ
165 # SAM Alignment CIGAR
167 # SAM Alignment RNEXT
169 # SAM Alignment PNEXT
171 # SAM Alignment TLEN
173 # SAM Alignment SEQ
175 # SAM Alignment QUAL
176 >>>>>>>>>>0 regex =^([^\t]+\t){10}[!-~]+ Sequence Alignment/Map (SAM)