#------------------------------------------------------------------------------
# $File: scientific,v 1.14 2023/04/29 17:28:09 christos Exp $
# scientific: file(1) magic for scientific formats
#
# From: Joe Krahn <krahn@niehs.nih.gov>
########################################################
# CCP4 data and plot files:
0 string MTZ\040 MTZ reflection file
92 string PLOT%%84 Plot84 plotting file
>52 byte 1 , Little-endian
>55 byte 1 , Big-endian
########################################################
# Electron density MAP/MASK formats
0 string EZD_MAP NEWEZD Electron Density Map
109 string MAP\040( Old EZD Electron Density Map
0 string/c :-)\040Origin BRIX Electron Density Map
>170 string >0 , Sigma:%.12s
#>4 string >0 %.178s
#>4 addr x %.178s
7 string 18\040!NTITLE XPLOR ASCII Electron Density Map
9 string \040!NTITLE\012\040REMARK CNS ASCII electron density map
208 string MAP\040 CCP4 Electron Density Map
# Assumes same stamp for float and double (normal case)
>212 byte 17 \b, Big-endian
>212 byte 34 \b, VAX format
>212 byte 68 \b, Little-endian
>212 byte 85 \b, Convex native
############################################################
# X-Ray Area Detector images
0 string R-AXIS4\ \ \ R-Axis Area Detector Image:
>796 lelong <20 Little-endian, IP #%d,
>>768 lelong >0 Size=%dx
>>772 lelong >0 \b%d
>796 belong <20 Big-endian, IP #%d,
>>768 belong >0 Size=%dx
>>772 belong >0 \b%d
0 string RAXIS\ \ \ \ \ R-Axis Area Detector Image, Win32:
>796 lelong <20 Little-endian, IP #%d,
>>768 lelong >0 Size=%dx
>>772 lelong >0 \b%d
>796 belong <20 Big-endian, IP #%d,
>>768 belong >0 Size=%dx
>>772 belong >0 \b%d
1028 string MMX\000\000\000\000\000\000\000\000\000\000\000\000\000 MAR Area Detector Image,
>1072 ulong >1 Compressed(%d),
>1100 ulong >1 %d headers,
>1104 ulong >0 %d x
>1108 ulong >0 %d,
>1120 ulong >0 %d bits/pixel
# Type: GEDCOM genealogical (family history) data
# From: Giuseppe Bilotta
# Update: Joerg Jenderek
# URL: http://fileformats.archiveteam.org/wiki/GEDCOM
# https://en.wikipedia.org/wiki/GEDCOM
# Reference: http://mark0.net/download/triddefs_xml.7z/defs/g/
# ged.trid.xml ged-utf8.trid.xml ged-utf16.trid.xml
# Note: called "GEDCOM Family History" by TrID and "Genealogical Data Communication (GEDCOM) Format" by DROID via PUID fmt/851
0 search/1/c 0\ HEAD GEDCOM genealogy text
#!:mime text/plain
#!:mime application/x-gedcom
# https://www.iana.org/assignments/media-types/text/vnd.familysearch.gedcom
!:mime text/vnd.familysearch.gedcom
!:ext ged
# no gedcom sample found and ged suffix also used for other formats
#!:ext ged/gedcom
>&0 search 1\ GEDC
>>&0 search 2\ VERS version
# 4 5.0 5.3 5.4 5.5 5.5.1 5.5.5 5.6 7.0 or no version
>>>&1 string >\0 %s
# From: Phil Endecott <phil05@chezphil.org>
# 0\040HEAD as UTF-16 big endian without BOM
0 string \000\060\000\040\000\110\000\105\000\101\000\104 GEDCOM genealogy text
!:mime text/vnd.familysearch.gedcom
!:ext ged
# look for VERS tag encoded as UTF-16 big endian
>12 search/0x65 V\0E\0R\0S version
# version like: 5.5.1
>>&2 bestring16 x %s
>>0 string x \b, UTF-16 (without BOM) big-endian text
# 0\040HEAD as UTF-16 little endian without BOM
0 string \060\000\040\000\110\000\105\000\101\000\104\000 GEDCOM genealogy text
!:mime text/vnd.familysearch.gedcom
!:ext ged
# look for VERS tag encoded as UTF-16 lttle endian
>12 search/0x65 V\0E\0R\0S version
# version like: 5.5.1
>>&3 lestring16 x %s
>>2 string x \b, UTF-16 (without BOM) little-endian text
# Note: UTF-16 with BOM variants already described above by first test as "GEDCOM genealogy text"
# 0\040HEAD as UTF-16 big endian with BOM
#0 string \376\377\000\060\000\040\000\110\000\105\000\101\000\104 GEDCOM data
# 0\040HEAD as UTF-16 little endian with BOM
#0 string \377\376\060\000\040\000\110\000\105\000\101\000\104\000 GEDCOM data
# PDB: Protein Data Bank files
# Adam Buchbinder <adam.buchbinder@gmail.com>
#
# https://www.wwpdb.org/documentation/format32/sect2.html
# https://www.ch.ic.ac.uk/chemime/
#
# The PDB file format is fixed-field, 80 columns. From the spec:
#
# COLS DATA
# 1 - 6 "HEADER"
# 11 - 50 String(40)
# 51 - 59 Date
# 63 - 66 IDcode
#
# Thus, positions 7-10, 60-62 and 67-80 are spaces. The Date must be in the
# format DD-MMM-YY, e.g., 01-JAN-70, and the IDcode consists of numbers and
# uppercase letters. However, examples have been seen without the date string,
# e.g., the example on the chemime site.
0 string HEADER\ \ \ \040
>&0 regex/1l \^.{40}
>>&0 regex/1l [0-9]{2}-[A-Z]{3}-[0-9]{2}\ {3}
>>>&0 regex/1ls [A-Z0-9]{4}.{14}$
>>>>&0 regex/1l [A-Z0-9]{4} Protein Data Bank data, ID Code %s
!:mime chemical/x-pdb
>>>>0 regex/1l [0-9]{2}-[A-Z]{3}-[0-9]{2} \b, %s
# Type: GDSII Stream file
0 belong 0x00060002 GDSII Stream file
>4 byte 0x00
>>5 byte x version %d.0
>4 byte >0x00 version %d
>>5 byte x \b.%d
# Type: LXT (interLaced eXtensible Trace)
# chrysn <chrysn@fsfe.org>
0 beshort 0x0138 interLaced eXtensible Trace (LXT) file
>2 beshort >0 (Version %u)